A novel statistical method predicts mutability of the genomic segments of the SARS-CoV-2 virusResearch Article Published on 2022-12-132022-10-29 Journal: Qrb Discovery [Category] COVID-19, [키워드] affected antiviral drugs approach candidate coding regions codon conserved correlated correlation determine develop disease distribution effective epitope Frequency genomic identify immunogenic peptide large-scale analysis mutability offer overcome pandemic pathogenesis of SARS-CoV-2 predict predicted Protein SARS-CoV-2 SARS-CoV-2 virus SARS-CoV2 scientist sequence Seven spike glycoprotein statistical statistical analysis target the SARS-CoV-2 virus treatments for COVID-19 Vaccine viral genome viral mutation whole genome whole genome sequence Word Ranking [DOI] 10.1017/qrd.2021.13 PMC 바로가기 [Article Type] Research Article
Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in PennsylvaniaArticle Published on 2022-10-262022-11-16 Journal: mBio [Category] COVID19(2023년), SARS, 변종, [키워드] Alpha analyzed animal reservoir bat coronavirus coronavirus COVID-19 epidemic creating deer Delta Delta variants Epidemics example future infection genomic data help Host Human humans identify independent Infection information Lineage mammals management Multiple nasal swab North America observation occur Odocoileus Odocoileus virginianus positive replicate reported reservoir RT-qPCR SARS-CoV-2 SARS-CoV-2 pandemic significantly spike gene susceptible trajectory Transmission transmissions variant vertebrates white-tail deer white-tailed deer whole genome sequence zoonosis zoonosis. [DOI] 10.1128/mbio.02101-22 PMC 바로가기
Cov2clusters: genomic clustering of SARS-CoV-2 sequencesArticle Published on 2022-10-192022-11-16 Journal: BMC Genomics [Category] COVID19(2023년), SARS, 유전자 메커니즘, [키워드] Accuracy advance approach bioinformatics Canada Cluster Clustering Combination COVID-19 pandemic epidemiological data epidemiologically Evidence genomic Genomic analysis global public health high accuracy High-resolution identify identifying increase in management mimicking pandemic pathogen Phylogenetic Phylogenetic tree produced producing Public public health Repository SARS-CoV-2 SARS-CoV-2 sequence SARS-CoV-2 sequence data sequence sequencing technology stability Surveillance the disease Transmission viral pathogen WGS whole genome sequence Whole genome sequencing whole genome sequencing. [DOI] 10.1186/s12864-022-08936-4 PMC 바로가기
Neutralization of Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant by Sera From BNT162b2 or CoronaVac Vaccine RecipientsBNT162b2 또는 CoronaVac 백신 수혜자의 혈청에 의한 중증 급성 호흡기 증후군 코로나바이러스 2 오미크론 변이체의 중화Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, 진단, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Antibody titer Antibody titers Beta Beta variant beta variants BNT162b2 CoronaVac coronavirus coronavirus 2 coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 vaccine Delta variants detectable Effectiveness elicited evade genome sequence geometric geometric mean GISAID database GMT GMTs Health Organization isolate Lineage Live virus microneutralization Mutation Nanopore nanopore sequencing neutralization Neutralizing Neutralizing antibodies neutralizing antibody Neutralizing antibody titer no significant difference not affect of BNT162b2 omicron Omicron variant Patient recipient recipients respiratory risk Risk assessment SARS-CoV-2 Sequencing sera severe acute respiratory syndrome Coronavirus significant difference significantly lower spike mutation strain Strains susceptibility TMPRSS2 Vaccine Vaccines variant Variant of concern. VeroE6 cells virus was determined whole genome sequence World Health Organization [DOI] 10.1093/cid/ciab1041 PMC 바로가기 [Article Type] Article
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning대학 발병 환경에서 SARS-CoV-2의 게놈 역학 및 공중 보건 계획에 대한 의미Article Published on 2022-07-192022-09-11 Journal: Scientific Reports [Category] COVID19(2023년), SARS, 유전자 메커니즘, 진단, 치료기술, [키워드] analysed Analysis characterising Cluster Combination Community condition epidemiological data Epidemiology Health policy higher education highlight implementation implication increase in independent Infection infections information Local majority Measures occurred outbreak Outbreaks public health risk risk of COVID-19 SARS-CoV-2 SARS-COV-2 infection sequencing coverage social contact term through contact university whole genome sequence Whole genome sequencing [DOI] 10.1038/s41598-022-15661-1 PMC 바로가기 [Article Type] Article
Tracking of SARS-CoV-2 Alpha variant (B.1.1.7) in Palestine팔레스타인에서 SARS-CoV-2 알파 변종(B.1.1.7) 추적Article Published on 2022-07-012022-09-11 Journal: Infection, genetics and evolution : journal of mol [Category] COVID19(2023년), SARS, 변종, [키워드] Alpha variant Analysis analyzed B.1.1.7 bootstrap clade Cluster collected COVID-19 COVID-19 mortality COVID-19 pandemic Diagnosis disease severity effective F-statistic gene flow Genetic variation genetics genome sequence homogenous Hypothesis impacted introduced Nablus new SARS-CoV-2 Palestine peaked Phylogenetic tree Population genetics remains uncertain replaced SARS-CoV-2 SARS-CoV-2 surveillance SARS-CoV-2 variants sequenced statistically statistically significant supported Tajima therapy Transmission Vaccine-induced immunity variant virulence WGS whole genome sequence Whole genome sequence. wild type [DOI] 10.1016/j.meegid.2022.105279 PMC 바로가기 [Article Type] Article
Genomic surveillance of SARS-CoV-2 in patients presenting neurological manifestations신경학적 징후를 보이는 환자에서 SARS-CoV-2의 게놈 감시Article Published on 2022-06-302022-09-11 Journal: PLoS ONE [Category] COVID19(2023년), SARS, 유전자 메커니즘, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Ageusia analyzed Anosmia Anosmia/ageusia approach Cell Central nervous system CNS coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 patient evaluate explain feature First wave genomic Genomic surveillance group Host in vitro in vivo individual infections Mutation Nasopharyngeal swab nasopharyngeal swabs neurological manifestation neurological manifestations Neurological symptom Neurological symptoms occur Patient patients presenting raised SARS-CoV-2 SARS-CoV-2 genomes SARS-CoV-2 positive patient selected severe acute respiratory syndrome Coronavirus severe symptoms shown Spectrum subset Support viral fitness viral genome viral sequence viral sequences virus was related while whole genome sequence [DOI] 10.1371/journal.pone.0270024 PMC 바로가기 [Article Type] Article
Identifying SARS-CoV-2 Variants of Concern through Saliva-Based RT-qPCR by Targeting Recurrent Mutation Sites재발 돌연변이 부위를 표적으로 하여 타액 기반 RT-qPCR을 통해 우려의 SARS-CoV-2 변이체 식별Article Published on 2022-06-292022-09-11 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제, [키워드] Accuracy antibody approach characterized clinical methods complement concern COVID-19 demonstrated diagnostic diagnostics E484K Efficacy Genetic identify identifying influence investigated L452R Mask mandates Mutation nucleotides omicron performed Population screening positive probe public health public health threat qPCR qPCR assays quarantine Real-time monitoring recommendation Recurrent RNA RT-qPCR RT-qPCR assay Saliva saliva samples SARS-CoV-2 SARS-CoV-2 strains SARS-CoV-2 variant SARS-CoV-2 variants screened selective Sequencing single nucleotide Site SNP South Spread Surveillance targeting Transmissibility treatment regimens variants variants of concern variants of concern. VoC VOCs whole genome whole genome sequence Whole genome sequencing [DOI] 10.1128/spectrum.00797-22 PMC 바로가기 [Article Type] Article
Genome sequence diversity of SARS-CoV-2 obtained from clinical samples in Uzbekistan우즈베키스탄의 임상 샘플에서 얻은 SARS-CoV-2의 게놈 서열 다양성Article Published on 2022-06-272022-09-11 Journal: PLoS ONE [Category] COVID19(2023년), SARS, 변종, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 affected Alpha Amino acid amino acid substitution annotation association change clade clades clinical isolates clinical sample Cluster coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 severity D614G Deleterious Deletion Delta Denmark disease severity evidenced Evolution female followed by genetic diversity Genome Genomic analysis genomic change Genotype help Identified isolate isolates male Missense Missense mutation Missense mutations Mutation Nextstrain NSP Nsp12 nsp13 Nsp3 nsp4 NSP6 nucleotide Open reading frame ORF ORF7a Pathogenesis PCR-positive patient Protein reading regions Research Russia SARS-CoV SARS-CoV-2 SARS-CoV-2 strain SARS-CoV-2 variant SARS-CoV-2 variants sequence severe acute respiratory syndrome Coronavirus severity significantly SNP SNPs subclade Substitution synonymous Tashkent the Spike two group two groups USA variant variants Variation WGS whole genome sequence with COVID-19 [DOI] 10.1371/journal.pone.0270314 PMC 바로가기 [Article Type] Article
Wastewater surveillance for SARS-CoV-2 in a small coastal community: Effects of tourism on viral presence and variant identification among low prevalence populations소규모 해안 지역 사회에서 SARS-CoV-2에 대한 폐수 감시: 관광이 바이러스 존재에 미치는 영향 및 유병률이 낮은 인구의 변종 식별Article Published on 2022-05-152022-09-11 Journal: Environmental research [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] analyzed chamber circulation collected Community community health Complete Concentration COVID-19 detect determine Effect Epidemiology evaluated FIVE genome sequence Genome sequences genomic Health indicated Indicator Linear regression Local Longitudinal studies longitudinal study MONITOR overlapping pandemic performed Poisson Population Population size positive positive result positive sample Prevalence Result RNA Sanger sequencing SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 RNA SARS-CoV-2 variant SARS-CoV-2 variants sequence Sequencing Surveillance the SARS-CoV-2 total RNA Tourism utility variant variants Viral genome sequencing viral loads viral presence Visitor was collected was used wastewater Wastewater-based epidemiology were recorded whole genome sequence Whole genome sequence. [DOI] 10.1016/j.envres.2021.112496 PMC 바로가기 [Article Type] Article